Posts will only show on the HSL website

Research Labs @ GMP Library News update – Zhiyuan Yao Attends the AAG-UIUC Summer School

Zhiyuan Yao is one of two GIS support students working in the Research & Data Service research labs at the Geology Math and Physics Library.  The Data & GIS collab is open to students, staff and faculty seeking help with their geospatial data needs, and the Visualization lab is open for data visualization consultations and collaborative work.  Email us at ASKData@ucmail.uc.edu for more information.  

Great learning and collaboration experience in AAG-UIUC Summer School

This summer in July, I was honored to be offered the opportunity to attend AAG-UIUC 2019 Summer School, which focused on Reproducible Problem Solving with Cyber GIS and Geospatial Data Science. During the one-week summer camp, I met many scholars, got access to the supercomputer Virtual Roger through CyberGIS-Jupter, learned the cutting-edge advances regarding geospatial data science, and got a deeper understanding about reproducibility and replicability. I absolutely had a wonderful time there, and this experience provoked me to think more about how we could develop novel solutions to complex problems.

 

Participants in the AAG-UIUC summer school with mentor Diana Sinton (Ex Director of UCGIS in the  green shirt) in the middle.

The summer school welcomed thirty students and scholars coming from twenty-five institutions and universities, including me. We were assigned into six groups aiming to solve six computational problems. Each group also had two mentors to help develop solutions for the assigned problems. I was assigned to solve a digital humanity problem. Our group members brainstormed, collaborated and finished the project successfully.

There were also hand-on workshops displaying the techniques that were useful in solving geospatial problems. Specifically, the techniques were mainly about applying Python to handling both vector and raster data, visualizing, and doing machine learning. The techniques accelerated the problem-solving process and introduced new ways to solve problems.

A workshop in progress

Beyond the amiable collaboration and practical Python knowledge, the fantastic talks by these prestigious speakers are impressive parts of this summer school. Eric Shook talked about the CyberInfrastructure. Victoria Stodden gave a wonderful talk about reproducibility in computational and data-enabled science. Charlie Catlett talked about the Array of Things, new devices and new data that helped to build up a smart city in Chicago. Tano Malik from DePaul University introduced reproducible containers as a solution to reproducible problems. These talks were inspiring as well as provoking. It made me think deeply that applying new technology to handling geospatial data is inevitable in the future and when we celebrated the advances brought by the new technology, we needed to be aware of the problems came along with it.

The group hard at work

It is really a wonderful experience attending the summer school. I highly recommend students who are interested in geospatial science to apply for it if there is another chance in the coming year. If you have any questions regarding the summer school, please feel free to contact me through yaozu@mail.uc.edu.

Announcing the Redesigned UC Libraries Website

redesigned libraries homepage

Check out the redesigned Libraries website scheduled to launch Thursday, Aug. 15.

Some of the new features and upgrades of the UC Libraries website redesign include:

  • updated look and feel and an uncluttered homepage
  • refreshed, user-centric content under the categories of: “Find, Request, Borrow,” “Special Collections,” “Research and Teaching Support,” “Spaces and Technology,” “About” and “My Accounts”
  • tabbed search box located prominently front and center at the top of the homepage, allowing users to search for articles, books, journals and databases much more quickly and easily
  • ability to search Research Guides by subject via the homepage
  • call-outs for Special Collections, Digital Technologies & Innovation and Library as Place
  • library news and links to information such as the Strategic Plan, Progress Report, Staff Directory and more.

Included in the redesign are all college and departmental (C&D) library web pages from the Archives to Rare Books Library to the Henry R. Winkler Center for the History of the Health Professions, as well as the Clermont College Library and UC Blue Ash College Library web pages.

While the starting web address of the site remains the same – www.libraries.uc.edu, the navigation and content within the site has changed, so update any links or bookmarks you may have to the site. And while great care was taken to be accurate, if broken links or missing content are discovered, contact Team Dynamix.

NIH Data and Open Science Expert to Present Lecture and Workshop on September 17, 2019

Image of Dr. Lisa Federer
Dr. Lisa Federer, PhD, MLIS

Join UC Libraries and IT@UC for a lecture on the reuse of biomedical research data and a workshop on data visualization in R.

On September 17th, Dr. Lisa Federer, Data and Open Science Librarian for the National Library of Medicine, will visit UC as part of our Data and Computational Science Series (DCS2).

The DCS2 planning committee cordially invites you to attend Dr. Federer’s lecture, luncheon and workshop.

Lecture and Luncheon:

If You Share It, Will They Come? Quantifying and Characterizing Reuse of Biomedical Research Data
Tuesday, September 17, 2019 11:00 AM to 1:00 PM
Henry R. Winkler Center for the History of the Health Professions, Stanley J. Lucas, MD Board Room.

Workshop:

Endless Forms Most Beautiful: Creating Customized Data Visualization with ggplot2 in R
Tuesday, September 17, 2019 1:30 PM to 3:30 PM
Donald C. Harrison Health Sciences Library, Dr. Stanley B. Troup Learning Space.

These events are free and open to all. Registration is required.

Register for the Lecture and LuncheonRegister for the Workshop.

Please be sure to log into the Faculty Development OneStop website to complete your registration.

Registration also permitted via phone and email | (513) 558-0725 | Don.Jason@uc.edu

These events are funded through a universal provider grant awarded by the Provost Office.

UC Libraries Invites You to Participate in the All of Us Journey to Help Create a Healthier Future

all of us mobile unitThe Donald C. Harrison Health Sciences Library will host the All of Us awareness and education mobile unit on Friday, June 21 from 10:00 a.m. – 4:30 p.m., 231 Albert Sabin Way, Kresge Circle.

Sponsored by the National Institutes of Health, the All of Us research program is building one of the largest biomedical resources of its kind to explore how lifestyle, environment and biological makeup affect health and disease. The program is a historic effort to gather data from one million or more people living in the United States to accelerate research and medical breakthroughs and to improve health by enabling individualized prevention, treatment and care for all of us. It is committed to engaging multiple sectors and forging strong partnerships with academic and other non-profit researchers, patient groups and the private sector.

The All of Us mobile unit is a hands-on experience to build awareness and excitement about the All of Us research program. Through this national tour, the traveling exhibit actively engages community members to join this landmark research project. Visitors to the All of Us mobile unit have the opportunity to engage with interactive video kiosks to learn about lifestyle, environmental and genetic factors that make each person unique, as well as receive information about precision medicine and the goals of the All of Us project.

For more information, visit the National Institutes of Health All of Us website at https://allofus.nih.gov/.

XSEDE High Performance Computing (HPC) Boot Camp

Posted on behalf of Amy Latessa,  Research Coordinator for IT@UC Research & Development

The Data & Computational Science Series presents:
XSEDE High Performance Computing (HPC) Boot Camp

Free Registration (required)

Description: This 4-day event will include MPI, OpenMP, OpenACC and accelerators. This event will be presented using the Wide Area Classroom(WAC) training platform and will conclude with a special hybrid exercise contest that will challenge the students to apply their skills over the following 3 weeks and be awarded the Fifth Annual XSEDE Summer Boot Camp Championship Trophy.  In addition, an XSEDE Badge will be available to those who complete the Challenge.

Tentative Agenda

When: June 3-6, 2019

Location: Langsam Library room 462

2911 Woodside Drive
Cincinnati, OH 45221

 

Note: You need an XSEDE account to register Create Account

Parking: Woodside Avenue Garage

Special Instructions: Participants should bring their own laptop, lunch will be provided.

Questions? Contact Amy Latessa 

XSEDE (eXtreme Science and Engineering Discovery Environment) is a virtual system that provides compute resources for scientists and researchers from all over the country. Its mission is to facilitate research collaboration among institutions, enhance research productivity, provide remote data transfer, and enable remote instrumentation. XSEDE is funded by National Science Foundation (NSF).  Getting Started Guide for XSEDE.

 

 

Attending Wednesday’s Cecil Striker Lecture? Stay for a Book Signing of “Leaving a Legacy: Lessons from the Writings of Daniel Drake.”

leaving a legacy book coverThe Henry R. Winkler Center for the History of the Health Professions and the Cecil Striker Society for the History of Medicine will host the 10th Cecil Striker Society Annual Lecture from 5:00-7:30 p.m. on Wednesday, May 15, in the Kresge Auditorium, Medical Sciences Building, 231 Albert Sabin Way.

This year’s lecture, titled Daniel Drake’s Connection to Sir William Osler: Celebrating Two Medical Education Reformers, will focus on the immense impact both physicians had on medical education. Philip M. Diller, M.D., Ph.D., and Robert E. Rakel, M.D., will serve as co-lecturers for the event.

Following the lecture, author Philip M. Diller will be on hand outside the Winkler Center to sign copies of his recently published book, Leaving a Legacy: Lessons from the Writings of Daniel Drake.

As documented here in his own words from excerpts of lectures, personal journal entries, presentations, speeches, books and letters to his children, readers learn about the scope of Daniel Drake’s accomplishments in medicine, contributions to his community, and dedication to his family. Diller goes beyond biography to contextualize Drake’s life choices and what makes him a role model for today’s physicians. Diller selected 180 thematically arranged excerpts, which he paired with original reflection questions to guide the reader through thought-provoking prompts.

Leaving a Legacy was published by the University of Cincinnati Press.

News from the RDS Research Labs @ GMP

As we begin the UC Maymester session, we are excited to share news about our students working in the Research and Data Services Research Labs @ the Geology Math and Physics Library.

We say farewell to one of our students working in the labs.  Sobiya George will return to the Chemistry Department for the summer and continue her research projects in Dr. Anna Gudmundsdottir’s lab.  We appreciate Sobiya’s hard work on the ImageJ and Zotero workshops, and wish her luck on her research.

Zhiyuan Yao, Sobiya George, and Jenny Latessa

And we offer many congratulations to Zhiyuan Yao on her acceptance to the AAG-UCGIS Summer School 2019.   Through this NSF supported program, Zhiyuan will be working with “30 graduate students and early career scholars to learn and collaborate in developing novel solutions to complex problems and to take advantage of geospatial data science and cutting-edge scientific advances and technical capabilities of cyberGIS (e.g., CyberGIS-Jupyter and Virtual ROGER: cybergis.illinois.edu/infrastructures). Participants will experience the types of collaborative and professional interactions that are key to addressing reproducible geospatial problem solving in the context of computation- and/or data-intensive research involving confidential geospatial data.”  This is an amazing opportunity for Zhiyuan to grow her skills and meet other researchers in the GIS field.  To learn more about this program, visit their website.  Good luck and enjoy the program.

Zhiyuan Yao in the Data & GIS Collab
Zhiyuan Yao

The lab will be open for consultations and workshops over the summer.  Check the Research Labs website  for the latest information on hours and any closures due to vacations.  Please note that many changes are coming to the libraries website as part of the greater UC website refresh.  For now, one easy way to find the Research Labs website is to visit the library libguide page and type in GIS.  The parent RDS website can now be found under the Research tab on the main Libraries.uc.edu website.  Email AskData@UC.edu if you have any questions.

Reflections of UC Data Day 2019 –

Article Written by Rebecca Olson – Social Science and Business Informationist.

On April 1, 2019, UC Libraries hosted the 4th annual Data Day Conference. A celebration of research being held on campus, in the local area, and on the national and international level, this year’s focus was on Diversity, Equity, and Inclusion in data.

The first keynote speaker, Amanda J. Wilson, detailed the All of Us program the National Library of Medicine and National institute of Health have funded and promoted. Individuals are allowed to take charge of their health by participating in and directing research. Parts of the program include providing access to resources at libraries, community centers, and laundromats to reach the broadest population.

Continue reading Reflections of UC Data Day 2019 –

Cecil Striker Society Annual Lecture Scheduled for May 15 to Celebrate Two Pioneers in Medical Education

cecil striker invite

The Henry R. Winkler Center for the History of the Health Professions and the Cecil Striker Society for the History of Medicine will host the 10th Cecil Striker Society Annual Lecture from 5:00-7:30 p.m. on Wednesday, May 15, in the Kresge Auditorium, Medical Sciences Building, 231 Albert Sabin Way.

This year’s lecture, titled Daniel Drake’s Connection to Sir William Osler: Celebrating Two Medical Education Reformers, will focus on the immense impact both physicians had on medical education. Philip M. Diller, M.D., Ph.D., and Robert E. Rakel, M.D., will serve as co-lecturers for the event. Continue reading Cecil Striker Society Annual Lecture Scheduled for May 15 to Celebrate Two Pioneers in Medical Education

Workshop on Research Reproducibility and Data Visualization using R.

Join UCLibraries and IT@UC for a workshop on Research Reproducibility and Data Visualization using R (part of the Data and Computational Science Series (funded by the Provost Office through a universal provider grant).

 

On April 16th, Dr. Mine Cetinkaya-Rundel, Associate Professor at Duke University and Data Scientist & Professional Educator at RStudio will be on campus to give a presentation about Reproducible Research and conduct a workshop on Data Visualization in R.

The day’s schedule is below.  The venue will be the Data Visualization Space in the Geology-Math-Physics Library – 240H Braunstein Hall.

10:00 am to 11:00 am  Presentation – Reproducible Research

11:00 am to 12:00 pm  Meet and Greet with Dr. Cetinkaya-Rundel  (Lunch provided)

12:00 pm to 2:00 pm  Workshop – Data Visualization in R with ggplot2 and gganimate

 

These events are free and open to all.

Visit the Faculty One Stop website to register.

More information about the DCSS 2019 series can be found on the DCSS website .

Flyer: DCS2 Word flyer_Rstudio