Digital Scholarship Center Receives Grant to Develop Text Mining and Summarization Methods to Aid in COVID-19 Research

The Digital Scholarship Center’s James Lee, PhD, and Danny Wu, PhD, MSI, Department of Biomedical Informatics, are one of 11 recipients of the College of Medicine’s Special Coronavirus (COVID-19) Research Pilot Grant Program. An opportunity open to all UC colleges in the Academic Health Center, the program was established to rapidly support the development of innovative studies that will contribute significantly to knowledge of COVID-19 in hopes to have significant impact on treatment, diagnosis and management of the infection or its prevention. With financial support from the UC Office of Research directed by Dr. Pat Limbach, and the College of Medicine Office of Research, the Special Coronavirus (COVID-19) Research Pilot Grant Program awarded a total of $425,000 to recipients.

The Digital Scholarship Center’s proposal, “Using Intelligent Text Mining and Summarization Methods to Address COVID-19 Open Research Dataset Challenge,” received a grant totaling $25,000 to develop a text mining pipeline and web-based intelligent query system to extract and summarize relevant COVID-19 related literature. The long-term research objective of the project is to create a usable and generalizable information resource to search scientific literature and generate knowledge through human-centered AI approaches.

“We anticipate the project to have important impacts within our research group, the university and the research community as a whole,” said James Lee, associate vice provost for digital scholarship, associate dean of libraries and director of the Digital Scholarship Center. “In building the intelligent query system, a broader impact will be made in the greater research community as we will develop a tool that can take any Coronavirus related question and summarize the literature.”

The intelligent query system will be evaluated on its usability and released to all researchers at the university as a self-service tool to support their COVID-19 research projects. Therefore, the system will likely have a great impact on the research productivity at the university, especially when many COVID-19 related grants have been or will be released in the next few months. “We anticipate that the intelligent query system could be a valuable tool to help understand and defeat this novel Coronavirus,” said Lee.

The Digital Scholarship Center is a catalyst for collaborative, trans-disciplinary forms of research and teaching, bringing together humanistic methods with technical innovations. For more information, visit their website https://dsc.uc.edu/.

Research and Data Services produces a photographic map of downtown Cincinnati circa 1962

I joined Research and Data Services (R&DS) in August 2019 as a Graduate Assistant (GA).  R&DS is composed of multiple research and consultation labs across campus including the Data & GIS Collab, which is located inside the GMP Library (Braunstein 240). The Collab is designed to provide research and teaching consultations on the use of geocomputational software such as ArcGIS and QGIS.

To demonstrate some of the capabilities of our lab and to showcase one of the GMP Library’s special collections, we selected a collection of historical aerial imagery of Cincinnati and Hamilton County from 1962. The goal of the project was to digitize these photographs and combine them into a single mosaicked image that contains important geospatial information.

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Three UC Libraries employees accepted to participate in RMD 102: Beyond Research Data Management for Biomedical & Health Sciences Libraries course

UC Libraries’ Rebecca Olson, Tiffany Grant and Don Jason have been accepted into the RDM 102: Beyond Research Data Management for Biomedical & Health Sciences Librarians (Spring 2020) course, offered through the National Network of Libraries of Medicine Training Office (NTO).  

The major aim of this course is to provide an introduction to the support of data science and open science with the goal of developing and implementing or enhancing data science and data literacy training and services at UC. Threaded throughout the course will be the librarian’s role in research reproducibility and research integrity and include practice in using Jupyter Notebooks. The course topics include an overview of data science and open science, data literacy, data wrangling, data visualization and data storytelling. 

Rebecca, business and social sciences informationist, Tiffany, research informationist, and Don, clinical informationist, are all members of the Research & Data Services Team and are working on forwarding the mission of the team and digital integration efforts across the Libraries. Participation in this course will afford both the opportunity to demonstrate improved skills in research data management, as well as to gain the knowledge and ability to support data science services here at UC.

 Please join us in celebrating their initiative and accomplishment!

Luna Digital Collections Application Briefly Unavailable Dec. 12

The Luna application, which houses some of our digital collections, will be upgraded to the latest version available from the vendor this morning, Dec. 12 starting at 10:00 am, so that we may patch some security vulnerabilities that were discovered from a recent scan of the server. Once the upgrade has been completed an all clear will be sent out for the server.

Most other digital collections continue to be available.

Thank you.

Read Source to learn more about the news, events, people and happenings in UC Libraries.

sourceRead Source, the online newsletter, to learn more about the news, events, people and happenings in UC Libraries.

In this issue of Source, Dean Xuemao Wang writes about his new role as vice provost for digital scholarship, which ties in with the article Introducing the Research @ Data Services Team.

The Libraries special collections are featured prominently in this issue with news of an exciting, surprise gift to the Neil Armstrong Commemorative Archives, promotion of a lecture series celebrating the digitization of the Albert B. Sabin Research Notebooks, and an announcement of a new UC exhibit featuring the Special Collections of four UC Libraries.

This fall brings new faces and new publications from the University of Cincinnati Press, along with the conclusion of the university’s Bicentennial celebration, which university archivist and head of the Archives and Rare Books Library Kevin Grace uses as the occasion to recount a gift from William A. Procter that was instrumental to the libraries.

Lastly, we announce that the Cecil Striker Society Annual Lecture is now our first fully endowed annual lecture.

Read these articles, as well as past issues, on the web at http://libapps.libraries.uc.edu/source/ and via e-mail. To receive Source via e-mail, contact melissa.norris@uc.edu to be added to the mailing list.

Research & Data Science Office Hours at CECH

Richard Johansen  and Rebecca Olson sitting at a tablefrom UCL RDS at CECH library for office hours.

Richard Johansen and Rebecca Olson from UCL RDS at CECH library for office hours.

On Thursday, September 19, 2019, the University of Cincinnati Libraries Research & Data Services team held office hours in the College of Education, Criminal Justice and Human Services (CECH) Library. Richard Johansen, data visualization specialist, and Rebecca Olson, business & social science informationist, spent two hours talking to students and faculty about data visualization, data management, Scholar@ UC, ICPSR and python and R workshops.

In addition, students and faculty from computer science and education majors chatted with R&DS about the Open Science Framework, ORCIDS, and UC’s own data repository, Scholar@UC. Visitors learned that the library offers many workshops to assist researchers, including survey administration through REDCAP, tips for best practices in the Research Cycle, Spreadsheet Best Practices, Intro to Data Visualization in R, QGIS and more.

Research & Data Services offers assistance with ORCIDs, the Open Science Framework, R programming, Data Visualization, and how the research cycle can be improved through data management practices. Please contact us at ASKDATA@uc.edu or stop by our next office hours for more information. Our workshops are held around campus and are open to all.  Spreadsheet Best Practices, Cleaning Data with Open Refine, and Intro to ICPSR will all be held this fall at the CECH library.

Richard and Rebecca will return to CECH on October 24th from 11:00 am – 1:00 pm.  Office hours will also be in the Faculty Enrichment Center, lobby of the Walter C. Langsam Library and the Donald C. Harrison Health Sciences Library  later this fall. Stay tuned!

CANCELLED: Got Data?! Join Us for the Data Visualization Showcase Oct. 25

PLEASE NOTE: THIS EVENT HAS BEEN CANCELLED.

The University of Cincinnati Libraries’ Research & Data Services is calling for virtual submissions that best demonstrate the power of visualization to present complex data.

Event

The Data Visualization Showcase will be held from 1-3 pm on Friday, Oct. 25, 2019 in the Visualization Laboratory (240H Braunstein Hall, Geology-Mathematics-Physics Library). Coffee and refreshments will be served. All are welcome.

Eligibility & Deadlines

Submissions for the showcase are open to all University of Cincinnati affiliates, but must be submitted to AskData@uc.edu by Oct. 11 to be considered for the awards. All submissions will be evaluated by a panel of judges and should follow submission guidelines.

Judging

The showcase will be juried by a panel of interdisciplinary judges scoring each submission on the following four tenants of data visualization: Impact, Storytelling, Technical Aptitude and Creativity. See the rubric for more details.

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UCBA Faculty Research Lightning Talks

by Lauren Wahman

These short presentations will showcase faculty research and share different aspects of the research process.

Thursday, March 28 from 2:00-3:00 pm
Muntz Hall 117

Ruth Benander
Barriers and Supports: A Qualitative and Quantitative Analysis of Student Perceptions in Comp and Comm Courses

Amy Miller & Patrick Owen
Blending Ecological, Microbiological, and Molecular Techniques to Create Multifaceted Undergraduate Research Projects

Ornaith O’Dowd 
The Ethics of Microaggressions

Erin Rinto Joins UC Libraries as Teaching and Research Librarian

Today, Erin Rinto began work at UC Libraries as the new teaching and research librarian in the Research and Teaching Services Department located in the Walter C. Langsam Library. Erin comes to UC from the University of Nevada, Las Vegas where she was the teaching and learning librarian.  Over the past six years at UNLV, she worked to integrate information literacy outcomes into the general education program via sustainable, evidence-based approaches, thus providing her with extensive teaching and research experience. Erin’s primary responsibility will be working with the English Composition program, including serving on the cross-jurisdictional English Composition Committee.

Welcome to UC Libraries, Erin.

 

Tell Us About Your Research Practices and Needs

In order for the University of Cincinnati Libraries to provide the best possible research and data support services, we would like to encourage all faculty, staff and students to participate in a brief survey regarding your research practices and needs.

Taking part in this survey is completely voluntary, but your participation will help us to continue and create more meaningful services centered around your research and data needs. If you agree to participate, please complete the survey via the URL provided to give us more information about your primary research area, the type of data used for your research, and the assistance sought to deal with your data. We appreciate your time and look forward to serving you.

https://redcap.research.cchmc.org/surveys/?s=NAAAF33RH4