Category Archives: HSL News

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New Biomedical and Programming Workshops at the Health Sciences Library

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Check out several new workshops at the UC Health Sciences Library this November!

All workshops will be held in the HSL Troup Learning Space G005G

Registration available at http://webcentral.uc.edu/hslclass/home.aspx.

Thursday, November 12, 2015, 10:30 am – 12:00 pm

NLM Biomedical Informatics: Bedside to Bench with NCBI

This workshop is designed for both researchers and clinicians who are looking to identify NCBI resources for research, clinical and educational purposes. Participants will learn about NCBI, NCBI’s “Information Hubs”, and NCBI’s experimental databases. The bulk of the workshop will involve an interactive hands on demonstration of a case study where participants will assist in the diagnosis of a genetic condition, identify genetic tests for disease confirmation, and help determine of the molecular etiology of the disease all while using NCBI resources. Many of the resources used for the demonstration are new or often over looked resources that are highly useful to the basic, translational and clinical research communities.

Thursday, November 19, 2015, 9:00 am – 10:30 pm

Bioinformatics: Seeking and Finding Data

In this workshop researchers will learn to navigate the bioinformatics tools Ensembl and Cytoscape to discover information about genes, gene variants, proteins, biological pathways, comparative genomics, molecular interactions, and phenotypes associated with disease.

Thursday, November 19, 2015, 2:00 – 4:00 pm

Introduction to Python

Come and learn this widely used, general purpose, high-level programming language. Python is often used as a scripting language for applications such as data processing, parsing and web services. This workshop will cover the basics of Python, including variables and data types, arrays, dictionaries, operators, conditions, loops, and functions. The focus will be on the hands-on exercises to help provide a better understanding of Python to the attendees. No programming experience is necessary.  Beginners are encouraged to attend. For supplemental information on this workshop, http://guides.libraries.uc.edu/python. Registration is required for this workshop.

In addition to these workshops, we will also be teaching a data management workshop in collaboration with the Science and Engineering Libraries.

Tuesday, November 17, 2015 – 850D Baldwin

Managing Data from Generation to Preservation

This 3 hour activities based workshop will examine data management principles for the various phases of data. Participants will create a data set and apply principles covering topics such as types and formats of data, file naming conventions, Readme files, metadata, backup and archiving data using UC resources, roles and responsibilities regarding data and university and national data policies.

Contact Kristen Burgess, Assistant Director for Research and Informatics, Health Sciences Library at kristen.burgess@uc.edu with any questions! We look forward to seeing you in November!

Check Out the Latest Issue of Source

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sourceRead Source, the online newsletter, to learn more about the news, events, people and happenings in UC Libraries.

This latest issue of Source includes an An Update from Dean and University Librarian Xuemao Wang on the Implementation of our Strategic Plan, a Celebration of William Shakespeare and an interview with Lori Harris, NLM Associate Fellow. There are articles about two exciting spaces in the Health Sciences Library – the new Informatics Lab and the newly named Dr. Stanley B. Troup Learning Space, as well as a list of fall events in UC Libraries. Read these articles and more.

Source is available on the web at http://libapps.libraries.uc.edu/source/ and via e-mail. To receive Source via e-mail, contact melissa.norris@uc.edu to be added to the mailing list.

Data Management Planning Workshops

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Join the University of Cincinnati Libraries for a series of workshops on data management planning! The workshops will address universal data management best practices for health sciences, science and engineering students and professionals. While much of the focus is on STEM fields, this course will be useful for anyone interested in learning more about data management practices and principles. Each workshop will include a teaching portion and hands on activities. We recommend that registrants attend all three workshops if possible. Workshops will be held in the Health Sciences Library (HSL) Electronic Classroom G005G.

Register at http://webcentral.uc.edu/hslclass/home.aspx

Workshops and Dates:

  • October 13th, 12 – 1:30p – Data Generation and Collection (Data Management Workshop 1)

This hands-on workshop will cover topics such as:  types and formats of data, file naming conventions, Readme files, data templates, metadata, and roles and responsibilities with data.

  • October 20th, 12 – 1:30p – Working with Data (Data Management Workshop 2)

A hands-on workshop that covers topics such as data versioning, data backup, and UC’s new Box system

  • October 27th, 12 – 1:30p – Data Preservation and Sharing (Data Management Workshop 3)

This hands-on, interactive workshop covers important aspects of data at UC and beyond including policies at the University and national levels,  copyright and data, and how UC’s systems (Scholar@UC, Research Directory)  integrate and use data.

For more information, contact Kristen Burgess, Assistant Director for Research and Informatics, Health Sciences Library, 513-558-3071

New Multi-Agency RFI on Exascale Computing

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RFI on Science Drivers Requiring Capable Exascale High Performance Computing ( http://grants.nih.gov/grants/guide/notice-files/NOT-GM-15-122.html)

Purpose: This is a multi-agency request for information to identify scientific research topics and applications that need High Performance Computing (HPC) capabilities that extend 100 times beyond today’s performance on scientific applications. Currently, computational modeling, simulation, as well as data assimilation and data analytics are used by an increasing number of researchers to answer more complex multispatial, multiphysics scientific questions with more realism.

Background: This is a request for information from NSF, DOE, and NIH for community input identifying scientific research that would benefit from a greatly enhanced new generation of HPC and in support of the National Strategic Computing Initiative (NSCI) (https://www.whitehouse.gov/the-press-office/2015/07/29/executive-order-creating-national-strategic-computing-initiative)

Request for Information: All responses must be submitted to NIGMS_exascale@nigms.nih.gov by October 16, 2015

Introduction to Cytoscape: Network Visualization Software

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Cytoscape is an open source molecular interactions visualization tool that allows the exploration of molecular interactions and biological pathways and integrates these networks with annotations, gene expression profiles, and other data. The Donald C. Harrison Health Sciences Library is facilitating a webinar on Cytoscape that will provide an introduction to some of the core functionality of Cytoscape, including the loading and manipulation of experimental data.

The webinar will be held on Monday, September 21st at 9am.

Registration: UC Cytoscape Webinar

Advancing Genomic Research at the University of Cincinnati

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The Donald C. Harrison Health Sciences Library is facilitating a webinar on Golden Helix’s suite of genomics analysis tools. The webinar will provide an overview of: SNP and Variation Suite which offers users the ability to manage and analyze genomic and phenotypic data, VarSeq which allows users to annotate and filter variants obtained from NextGen sequencing and GenomeBrowse, a powerful genomic data visualization tool.

Continue reading →

Check out the new Informatics Lab at the Health Sciences Library!

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Informatics Lab: A Collaborative Space for Innovation at the Health Sciences Library

The Informatics Lab is designed for innovative and collaborative hands-on learning experiences. It is a place for UC researchers and graduate students to connect, collaborate, and receive research support services. The space includes an iMac and a Windows PC with many visualization, design, and statistical software packages, 4 whiteboard tables and 2 moveable whiteboards for collaborative work.

To reserve the room or suggest software, contact us at informaticslab@uc.edu.

Hours:   Mon.-Fri. 9 AM – 5 PM

Location: E005L (near the back of the E Level of the Health Sciences Library)

Technology and Software

Software

Windows 7:Office,Skype, SPSS,SAS,R, RStudio, Matlab,CLC Main Workbench,Cytoscape, ArcGIS, QGIS, GeoDA, TerraGO Toolbar, Satscan, EpiInfo, 7zip,Notepad++,Python + scipy + NumPy IGV,MySQL Workbench, Adobe Creative Cloud (Photoshop, Illustrator, Acrobat Pro, InDesign, InCopy, Dreamweaver, FlashPro/Builder, Acrobat Pro, Audition, Bridge, Animate, Prelude, Fireworks)

OSX:Office, Skype, SPSS, SAS, R, RStudio, Matlab, CLC Main Workbench, Cytoscape,QGIS, GeoDA, TerraGO Toolbar, Satscan, EpiInfo, TextMate, The Unarchiver, Python + scipy + NumPy IGV, MySQL workbench, Adobe Creative Cloud (Photoshop, Illustrator, Acrobat Pro, InDesign, InCopy, Dreamweaver, FlashPro/Builder, Acrobat Pro, Audition, Bridge, Animate, Prelude, Fireworks)

Equipment: 1 iMac,1 PC,1 AirMedia unit for wireless presentation from any mobile device,4 whiteboard tables, 2 standing whiteboards, 1 wall-mounted white board, 1 3D printer (coming in the future)

More information is available at http://www.libraries.uc.edu/hsl/digital/digital-labs-hsl.html

New Research Guides Platform!

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Does the research guide you use regularly suddenly look different?  It is different – the research guides changed platforms and design!

In addition to the new look and feel, the Health Sciences Library Research Guides now have a responsive design, enhanced browsing functionality and are more user friendly for tablet and mobile phone users.  These changes and more incorporate accessibility design features required for any University of Cincinnati web pages and 3rd party web based products.  Find out more about accessibility requirements at UC.

Check out the new Health Sciences Library Research Guides design at http://guides.libraries.uc.edu/hsl and share your thoughts with us at http://www.libsurveys.com/loader.php?id=12e35f407e155608c441d055474d4f9c

 

 

DynaMed Plus is Now Available!

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DynaMedPlus

 

 

 

The UC Health Sciences Library now has access to DynaMed Plus™.  Get answers to your clinical questions fast—try it here.

DynaMed Plus, the next-generation, evidence-based clinical information resource is written by a world-class team of physicians. A rigorous evidence-based editorial process provides synthesized information and objective analysis to answer your clinical questions quickly and easily.

DynaMed Plus features: Continue reading →

CRCnetBASE: a Science, Technology, and Medicine eBook Platform

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CRCnetBASE provides a comprehensive e-book collection in over 350 subject areas and more than 40 collections.  Browse or search across the collection for your science, technology, or medical topic.  Check out the collections below.

CRCnetBASE Biomedical Science Collection

CRCnetBASE Environmental Engineering Collection

CRCnetBASE Environmental Science Collection

CRCnetBASE Ergonomics & Human Factors Collection

CRCnetBASE Life Science Collection

CRCnetBASE Medicine Collection

CRCnetBASE Nutrition Collection

CRCnetBASE Occupational Health & Safety

CRCnetBASE Pharmaceutical Science & Regulation Collection

CRCnetBASE Statistics Collection

Find CRCnetBASE collections via the online catalog or via the HSL eBook page.