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Ohio Supercomputer Center to Provide Two Workshops on Resources

Posted on behalf of Jane Combs

Associate Director, IT@UC Research & Development University of Cincinnati

The Ohio Supercomputer Center will offer two workshops on its resources and how to use them Tuesday March 13, on both East and West campuses.
IT@UC Research & Development will be hosting the Ohio Supercomputer Center for two workshops on Tuesday, March 13. The morning workshop will provide an introduction to the Ohio Supercomputer Center resources and how to use them. In the afternoon, the workshop will cover Big Data Analytics and Spark.

The Ohio Supercomputer Center, headquartered in Columbus, partners with Ohio researchers to develop proposals to funding organizations and is the state’s leading strategic research group.

The morning session will take place on West Campus, Langsam Library, room 475 from 10:30 a.m. – 12 p.m. The afternoon session will take place on East Campus in MSBRCV, E602 from 1:30 – 4 p.m. Laptops are needed if attendees want to participate in the hands-on portions of the sessions.

Workshops are open to anyone interested in learning about OSC services and those who want to use their accounts more efficiently; this is a great opportunity to ask any questions you have about performing your computational research on our systems. There are no prerequisites for attending.

 Morning topics include:

  • High performance computing concepts
  • Hardware and software available at OSC
  • Storage and file systems
  • How to start a new project and request resources
  • How to use our web portal OnDemand
  • Introduction to batch processing

Afternoon topics will include:

  • Introduction to Big Data
  • Data analytics at OSC
  • Running Hadoop and Spark at OSC

Register HERE

For additional information, contact Jane Combs at combsje@uc.edu.

2018_313 OSC Workshop Flier-UC

Feb. 28 Digital Humanities Speaker Series to Feature Two Speakers from the University of Iowa

digital humanities speaker series

Sponsored by the Digital Scholarship Center, the next Digital Humanities Speaker Series event, scheduled for Wed., Feb. 28 in both the Walter C. Langsam Library and the Donald C. Harrison Health Sciences Library, will feature David Eichmann, director and associate professor in the School of Library and Information Science, and Blaine Greteman, associate professor of English, both from the University of Iowa. Both sessions are free and open to all.

Blaine Greteman
Blaine Greteman
David Eichmann
David Eichmann

10:00 a.m.-noon: [Keynote]: “Networking Print: Small Worlds, Phase Transitions, and Hidden Histories in 500,000 Early English Books.” Led by: Blaine Greteman. Co-Presenter: David Eichmann.  Location: Walter C. Langsam Library 462

Noon-12:45 p.m.:  Lunch- all welcome, Langsam 462

1:30-3:30 p.m.:  “Identification of Collaborator Networks in Biomedicine (and How They Relate to the Printing/Publishing Community of Pre-1800 England).” Led By: David Eichmann. Co-Presenter: Blaine Greteman. Location: Donald C. Harrison Health Sciences Library, Dr. Stanley B. Troup Learning Space (MSB G005G)
David Eichmann has conducted research in relational database theory, software reuse and reengineering, web search engines and intelligent agents, biomedical informatics and ontology-based research profile harvesting and visualization.  His current projects include Shakeosphere (modeling the social network of the print community in England 1540-1800), CTSAsearch (aggregating research profiles from 70+ institutions), CD2H (an informatics coordinating center for the CTSA consortium) and Linked Data for Libraries (LD4L) (where he is part of a consortium exploring the next generation of library catalogs).

Blaine Greteman writes regularly for popular publications including The New Republic, Slate, TIME and The Week. His first book was The Poetics and Politics of Youth in Milton’s England (Cambridge University Press, 2013); his forthcoming book, Networking Early English Print (Stanford University Press), is based on Shakeosphere, a digital project built in collaboration with David Eichmann. Greteman holds an M.Phil from Oxford, where he attended on a Rhodes Scholarship, and a Ph.D. from U.C. Berkeley.

Located in the Walter C. Langsam Library, the Digital Scholarship Center (DSC) is a joint venture of the University of Cincinnati Libraries and the College of Arts and Sciences. Launched in September 2016 as an academic center, the DSC provides faculty and students across the university with support for digital project conception, design and implementation. For more about the Digital Scholarship Center, visit  http://dsc.uc.edu.

Love Data Week 2018

“Hey Data-ful, do you come here often?”                              

“Why yes, yes I do, You can always find me in the repository.”

It is Love Data Week and time to show your love for your research output.

What is Love Data Week (#LDW18)?

From the Love Data Week website – http://lovedataweek.org/

Similar to Open Access Week, the purpose of the Love Data Week (LDW) event is to raise awareness and build a community to engage on topics related to research data management, sharing, preservation, reuse, and library-based research data services. We will share practical tips, resources, and stories to help researchers at any stage in their career use good data practices.

Love Data Week is a social media event coordinated by research data specialists, mostly working in academic and research libraries or data archives or centers. We believe research data are the foundation of the scholarly record and crucial for advancing our knowledge of the world around us. If you care about research data, please join us! This event is open to any institution – small, large, research intensive or not, so please feel free to share, adapt, and improve upon it.  We encourage individuals, data librarians or otherwise, to participate in the campaign.

Continue reading Love Data Week 2018

UC Libraries Offering LabArchives Electronic Lab Notebook to UC Research Community

The University of Cincinnati Libraries, with funding from the Office of the Provost, is pleased to present the LabArchives Electronic Lab Notebook to the UC research community.

An enterprise-wide license with LabArchives has been obtained for UC and will last until June 30, 2018.*

LabArchives is the leading secure and intuitive cloud-based Electronic Lab Notebook (ELN) application enabling researchers to easily create, store, share and manage their research data. Far more than an ELN, LabArchives provides a flexible, extensible platform that can be easily customized to match your lab’s workflow providing benefits to Principal Investigators, lab managers’ staff, post doctoral fellows and grad students. LabArchives can be integrated seamlessly with GraphPad Prism, MS-Office, PubMed, BOX, Learning Management Systems and a number of other software tools that are used extensively by researchers of the Academic Health Center and university wide. Additionally, the LA ELN works on multiple platforms and devices including Mac, Windows, Android and iPad devices, allowing researchers to store and access their data from virtually anywhere with Internet access.

For more information about LabArchives: http://www.labarchives.com/.

To sign up for a LabArchives account: https://mynotebook.labarchives.com/. Continue reading UC Libraries Offering LabArchives Electronic Lab Notebook to UC Research Community

Registration Now Open for Third Annual UC DATA Day Scheduled for March 6

The University of Cincinnati Libraries and IT@UC announce the third annual UC DATA Day. Scheduled for 8:30 a.m.-4:15 p.m., Tuesday, March 6 in Nippert Stadium West Pavilion on UC’s Main Campus (see directions), UC DATA Day 2018 offers a full schedule of engaging events that will reveal solutions to data challenges and foster a community of best practices around improved data management. All events are free and include lunch. The public is welcome.

Registration is now open at http://libapps.libraries.uc.edu/blogs/dataday/registration/. Seats are limited, so register early.

Patricia Flatley Brennan
Patricia Flatley Brennan

The UC DATA Day 2018 keynote speaker is Patricia Flatley Brennan, RN, PhD, director of the National Library of Medicine (NLM). The NLM is the world’s largest biomedical library and the producer of digital information services used by scientists, health professionals and members of the public worldwide. Prior to her work at the NLM, she was the Lillian L. Moehlman Bascom Professor, School of Nursing and College of Engineering, at the University of Wisconsin–Madison.

The day will include panel discussions on “Game Changing Data: How Data is being used to Affect Change,” “Big Data” and “Data Solutions: Your Questions Answered.” In addition, attendees can participate in two technical sessions on data analysis and data visualization with Python. During lunch, service providers will speak on how they support researchers and research data management.

For more information on UC DATA Day 2018, contact Tiffany Grant, interim assistant director for research and informatics, at (513) 558-9153 or tiffany.grant@uc.edu.

A Closer Look at the UC Libraries A-Z Databases List

UC Libraries moved to the new A-Z Databases List platform in July of 2017 just in time for the fall semester. The new platform provides easier access to UC Libraries databases and other databases available to UC students, faculty, and staff.  Now that the spring semester is starting, take a closer look at the features of the A-Z Database List.

Features:

Additional Features in the Column on the Right:

  • New/Trial Database list: new resources are highlighted in the right column. Resources labeled as ‘Trial” will also be listed while being considered for future subscriptions.
  • Report Database Errors: report a database problem using the form located below the new databases list.
  • Icon Key: at the bottom of the right column is a key for the icons associated with each database entry.

So take a closer look at the A-Z Databases List!  Use the list search and sort features to explore the 830 databases available to all UC students, faculty and staff.

HImage of the library website database search box ow do to get to the A-Z Database List: Use the red search box on any library website.

Click on the Database tab, type the name of the database in the search field and click on go or click on the link that takes you directly to the list.

 

 

 

 

 

 

 

MedlinePlus: Health Information for Health Professionals and Consumers

MedlinePlus is the National Institutes of Health’s Web site for patients and their families and friends. Produced by the National Library of Medicine, the world’s largest medical library, provides current and reliable information about diseases, conditions, and wellness issues.

Content includes:

  • Health topics – symptoms, causes, treatment and prevention for over 1000 diseases, illnesses, health conditions and wellness conditions that are regularly reviewed and updated
  • Drugs, Herbs and Supplements – information about prescription drugs, over-the-counter medicines, and herbs and supplements.
  • Videos & Tools – videos on anatomy, body systems, and surgical procedures. Tools such as interactive tutorials and games, calculators and quizzes to test knowledge and health.
  • Lab Test Information – what the lab test is, why it was ordered, how it will feel, and what the results mean.
  • Medical Encyclopedia – The A.D.A.M. Medical Encyclopedia includes over 4,000 articles about diseases, tests, symptoms, injuries, and surgeries. It also contains an extensive library of medical photographs and illustrations.
  • NIH MedlinePlus Magazine – reports on the latest NIH-supported research breakthroughs and features people from all walks of life talking about how they’ve handled health challenges.
  • MedlinePlus Connect – an option for health providers to provide quality health information for patients via patient portals or the patient health record. MedlinePlus Connect is a free service of the National Library of Medicine (NLM), National Institutes of Health (NIH), and the Department of Health and Human Services (HHS).

Check out MedlinePlus and share it with patients, friends, and family.

PubMed Health: Clinical Effectiveness Research Reviews

What is PubMed Health?  PubMed Health provides information for consumers and clinicians on prevention and treatment of diseases and conditions.  It specialized in reviews of clinical effectiveness research, with easy-to-read summaries for consumers as well as full technical reports.

What else does PubMed Health provide?

  • Systematic reviews of clinical trials showing what has been proven to work and what remains unknown
  • Summaries and full texts of selected systematic reviews in one place published or updated from 2003
  • Information for consumers and clinicians based on those reviews
  • Methods resources collection that includes documents about the best research and statistical techniques for systematic reviews and effectiveness research
  • Searches that run simultaneously in PubMed.  A filter is used to identify all the indexed scientific articles at the National Library of Medicine (NLM) that might be systematic reviews

So take a moment to search and explore PubMed Health this freely available resource!

PubMed Health is a service provided by the National Center for Biotechnology Information (NCBI) at the U.S. National Library of Medicine (NLM).

First Mapathon held at UC Libraries

On November 4th, UC Libraries partnered with the Cincinnati-Dayton Region office of the Red Cross and the Geography Graduate Student Association (GGSA) to hold a Missing Maps mapathon.

Students participating in mapathon

Twenty students, librarians and Red Cross members gathered at Langsam Library where Red Cross interns Michael Gladstone and Meri Sambou led the group through a brief training and explained the task assigned.

Continue reading First Mapathon held at UC Libraries

Center for Open Science Workshop

Recently UC Libraries and the Graduate School hosted the Center for Open Science for two workshops on research reproducibility.  The Center for Open Science, a non-for-profit based in Charlotteville, Va.  promotes openess, integrity and transparency in research.  Ian Sullivan of the COS facilitied the workshop and worked with researchers to address several types of repoducibility issues in research- Computational, Methodological and Results replicability.

Ian Sullivan of the COS works with UC students and Biology faculty Nate Morehouse at reproducibility workshop

Computational reproducibility means that given the data and code/analysis methods used, someone else could reproduce the graphs and calculations in your paper or report.  Methodological reproducibility means that someone else could follow your protocols and rerun the experperiment or research again and get the same results as you did.  And results replicability means that with new data and using your methods and analysis, someone else can come to the same conclusion as you did.

Continue reading Center for Open Science Workshop