New Books in Oesper (History of Chemistry)

Two interesting publications by and about Dr. William Jensen, the curator of the Oesper Museum, have been added to the Oesper history of chemistry book collection.  Click here to see the details in the March-April 2018 list.

For more information about Oesper and the apparatus museum, click here.

If you have any questions about this collection, contact Ted Baldwin, Director of Science and Engineering Libraries, at Ted.Baldwin@uc.edu.

 

XSEDE High Performance Computing Summer Boot Camp 2018

 

As part of the Data and Computational Science Series funded by the Provost Office, IT@UC and UC Libraries will host a XSEDE HPC Summer Boot Camp.  

The University of Cincinnati is pleased to be a remote site for the XSEDE Summer Boot Camp, taught by the Pittsburg Supercomputing Center. The workshop will run from 11:00 am to 5:00 pm each day from June 4-7th. This 4-day event will include training with MPI, OpenMP, OpenACC, and accelerators.  The workshop will conclude with a special hybrid exercise contest that will challenge participants to apply their skills for three weeks after the training. Winners will be awarded the Fifth Annual XSEDE Summer Boot Camp Championship Trophy and an XSEDE Badge will be available to those who complete the challenge.

The event is free and open to all.  If you have further questions or need parking directions,

please contact Jane Combs: combsje@ucmail.uc.edu

Date: Monday, June 4 – Thursday, June 7, 2018

Location: CECH Library Room 320, Teachers-Dyer Complex

Free Registration (required) Click Here!

Note: You need an XSEDE account to register: Create Account

Tentative Schedule (Eastern Standard Time)

Special Instructions: Participants should bring their own laptop, no previous HPC experience needed, snacks and lunch will be provided.

Parking: Stratford Heights Garage, 2630 Stratford Avenue

XSEDE Overview

XSEDE (eXtreme Science and Engineering Discovery Environment) is a virtual system that provides compute resources for scientists and researchers from all over the country. Its mission is to facilitate research collaboration among institutions, enhance research productivity, provide remote data transfer, and enable remote instrumentation. XSEDE is funded by National Science Foundation (NSF).  Getting Started Guide for XSEDE.

 

 

Congratulations to Award Winning Capstone Project

Seniors Celeste Bauer, John Meyer and Xi Ru take first prize for their Environmental Engineering Capstone Project

The Data & GIS Collab would like to congratulate Environmental Engineering Seniors John Myers, Xi Ru, and Celeste Bauer on their award winning capstone project. The project entitled “Ohio River Harmful Algal Blooms: Indicators and Real Time Monitoring” resulted in the design a geographic web application that tracks and updates river conditions from sensors set at multiple points along the Ohio River.  Collab Students Shiyu Gong and Jenny Latessa worked with Ms. Ru as she investigated various web mapping tools for her team to use.  This is one of several web mapping projects the Collab has consulted on recently and shows growing interest and applications for this type of mapping.  It is a great pleasure for the lab to be involved and to gain knowledge about new tools and  techniques.  We congratulate John, Xi and Celeste on their hard work and great ideas and wish them much success in their future endeavors.

Farewell and Hello – New Student Helper in the Data & GIS Collab

With the end of the semester comes change.  And this is also true for the Data & GIS Collab.  Our wonderful student Shiyu Gong will end her time with us as finals end this week.  We thank her for all the hard work and wish her the best as she pursues the goals of her next phase of education.  You will do amazing work!

Shiyu Gong

 

 

 

 

 

 

 

We also welcome a new student to the lab.  Zhiyuan Yao will join us starting April 30th.  She is a Geography & GIS graduate student and has much GIS expertise.  She has been a TA for both introduction and intermediate GIS courses and is interested in transportation research.  She is eager to help you with your spatial analysis.  Come visit her in the Collab.  Hours for the lab are posted at  https://guides.libraries.uc.edu/GISandData/Collab

Zhiyuan Yao, Jenny Latessa and Shiyu Gong of the Data & GIS Collab

FREE Conference: Precision Genomics Midwest, May 11, 2018

From making a diagnosis to tailoring treatment to an individual to someday curing disease, precision genomics is having a profound impact on healthcare.

Cincinnati Children’s Center for Pediatric Genomics and the University of Cincinnati launched Precision Genomics Midwest last year to bring genomic education to the Midwest. Often, clinicians and researchers don’t have the time to attend large national events, but they still need to learn about how genomics will be integrated into clinical care; about genomic technologies; and ongoing research in the field.

This one-day, free event – May 11 at the Kingsgate Marriott on the University of Cincinnati campus – is packed full of education on topics relevant to clinicians, researchers, pharmacists, genetic counselors, lab managers, nurses, and students.

Highlights include:

  • The whole day is free, including lunch.
  • Two keynotes: Dan Kastner, MD, PhD, Scientific Director at the National Human Research Genome Institute, and Mike Murray, MD, Director of Clinical Genomics at Geisinger Health System.
  • A new Bioinformatics track, with breakouts in clinical and research genome bioinformatics
  • Break-out sessions including genomics in the clinic, pharmacogenomics, epigenetics, and ethical, legal, and social implications of genomics.
  • A panel discussion on Innovative Genomic Therapeutics: Is Gene Editing or Gene Therapy the Answer to Curing Human Disease?
  • The largest exhibitor fair in the Midwest, featuring more than 30 vendors and sponsors.
  • A networking cocktail hour to finish the day.

Precision Genomics Midwest rapidly is becoming the Midwest’s premier precision medicine conference, by attracting regional attendance and national speakers while simultaneously showcasing talent from UC and Cincinnati Children’s. The inaugural year had nearly 360 registrants from more than 25 different institutions across the Midwest.

Cincinnati Children’s and UC College of Medicine are co-sponsoring the free conference. Other contributing partners include the Cincinnati Children’s Research Foundation, University of Cincinnati Libraries, and the Center for Clinical and Translational Science and Training.

PGM is free, but space is limited. For the agenda, registration, and exhibitor prospectus, go to www.cincinnatichildrens.org/pgm. For updates, follow @CincyKidsGenomX on Twitter.

Data Cleaning with OpenRefine – Workshop on Feb 26

UC Libraries is pleased to offer a data science workshop this spring on OpenRefine. Join us in 850D Baldwin Hall (CEAS Library classroom) on Monday, February 26 from 2:00pm – 4:00pm.  Register here (UC 6+2 Central Login required).

OpenRefine, http://openrefine.org, is a free, powerful, and easy-to-use tool for cleaning up and transforming datasets in order to prepare them for analysis and sharing. In this workshop, you will learn how to leverage OpenRefine’s interface and scripting language for basic data exploration and bulk transformations. No prior knowledge necessary.  Please bring your own laptop for the hands-on exercises.

Contact Ted Baldwin with questions, Ted.Baldwin@uc.edu .

Ohio Supercomputer Center to Provide Two Workshops on Resources

Posted on behalf of Jane Combs

Associate Director, IT@UC Research & Development University of Cincinnati

The Ohio Supercomputer Center will offer two workshops on its resources and how to use them Tuesday March 13, on both East and West campuses.
IT@UC Research & Development will be hosting the Ohio Supercomputer Center for two workshops on Tuesday, March 13. The morning workshop will provide an introduction to the Ohio Supercomputer Center resources and how to use them. In the afternoon, the workshop will cover Big Data Analytics and Spark.

The Ohio Supercomputer Center, headquartered in Columbus, partners with Ohio researchers to develop proposals to funding organizations and is the state’s leading strategic research group.

The morning session will take place on West Campus, Langsam Library, room 475 from 10:30 a.m. – 12 p.m. The afternoon session will take place on East Campus in MSBRCV, E602 from 1:30 – 4 p.m. Laptops are needed if attendees want to participate in the hands-on portions of the sessions.

Workshops are open to anyone interested in learning about OSC services and those who want to use their accounts more efficiently; this is a great opportunity to ask any questions you have about performing your computational research on our systems. There are no prerequisites for attending.

 Morning topics include:

  • High performance computing concepts
  • Hardware and software available at OSC
  • Storage and file systems
  • How to start a new project and request resources
  • How to use our web portal OnDemand
  • Introduction to batch processing

Afternoon topics will include:

  • Introduction to Big Data
  • Data analytics at OSC
  • Running Hadoop and Spark at OSC

Register HERE

For additional information, contact Jane Combs at combsje@uc.edu.

2018_313 OSC Workshop Flier-UC