Most UC Libraries Closed Labor Day, Monday, Sept. 3

labor dayUC Libraries will be closed Monday, September 3 for Labor Day, except for the Donald C. Harrison Health Sciences Library, which will be open 9am-5pm. This closing includes the Walter C. Langsam Library 4th floor space, which will close Sunday, September 2 at 11pm and re-open Tuesday, September 4 at 7:45am.

A complete listing of library hours can be found online at www.libraries.uc.edu/about/hours.html.

Enjoy the long holiday weekend.

BioCyc Microbial Genomes and Metabolic Pathways Web Portal

BioCyc Database Collection Logo

 

 

 

The BioCyc Microbial Genomes and Metabolic Pathways Web Portal is coming to the University of Cincinnati.

Beginning August 31st, researchers can access the full suite of databases in the BioCyc Database Collection. The BioCyc web portal from SRI International contains genome and metabolic-pathway information for over 10,000 microbes. BioCyc encyclopedias are unique in integrating a diverse range of data and providing a high level of curation for important microbes. BioCyc Pathway/Genome Databases (PGDB) describe the genome of an organism, as well as its biochemical pathways and (for a small fraction of organisms) its regulatory network. BioCyc bioinformatics tools combine unparalleled breadth and user friendliness and include a unique set of visualization tools to speed comprehension of its extensive and complex data.

BioCyc databases integrate extensive data for each organism, and provide platforms for analysis of large-scale datasets. BioCyc enables scientists to pursue several use cases:

  • BioCyc is a massive encyclopedic reference on microbial genes, metabolites, and pathways that integrates information from many sources. Scientists consult BioCyc to save large amounts of time finding, understanding, and synthesizing material from the primary literature.
  • BioCyc is a genome informatics and comparative genomics platform.
  • BioCyc enables exploration of a vast set of biological networks.
  • BioCyc provides gene-expression, metabolomics, and multi-omics analysis tools.
  • BioCyc provides executable metabolic models for a small but growing set of organisms.

BioCyc Informatics Tools

  • Search for genomes by name, taxonomy, phenotypic properties.
  • Gene information page
    • Retrieve amino-acid sequence and nucleotide sequence of arbitrary genome region.
    • Query genes by gene name, accession number, sequence length, replicon position, protein properties (pI, MW, protein features, subcellular location, ligand), GO terms.
  • Transcription-unit information page.
  • Genome Browser depicts genomic regions at user-selected resolution with semantic zooming that reveals new features at higher resolutions. Visible features include pseudogenes, promoters, transcription-factor binding sites, repeats, terminators, nucleotide sequence. Zoom to sequence. Generate genome poster.
  • BLAST search sequence-pattern search via patmatchMap SNPs to genes and show effects on translation.

Access this URL for more information about BioCyc databases and features: https://biocyc.org/intro.shtml.

Some additional links that may be helpful:

Webinars: https://biocyc.org/webinar.shtml

Guided tour: https://biocyc.org/samples.shtml

User guide: https://biocyc.org/PToolsWebsiteHowto.shtml

Data Sheet: BioCyc data sheet

Questions?

Contact:

Tiffany J. Grant, PhD
Interim, Assistant Director for Research and Informatics
Research Informationist
Co-Leader, Research Services
Health Sciences Library
Office: (513) 558-9153
E-mail: joffritm@ucmail.uc.edu
Web: http://libraries.uc.edu/digital-scholarship/data-services.html

Join UC Libraries for “The Great American Read” and Vote for Your Favorite Novel

The Color Purple, Harry Potter, Gone Girl – is one of these your favorite novel? Did you enjoy or struggle reading The Grapes of Wrath, War and Peace or Heart of Darkness when assigned for class? Did you sneak read The Stand or Twilight when your teacher wasn’t looking? These favorite, or not-so-favorite, books are amongst the 100 best-loved novels up for consideration as “The Great American Read.”

The University of Cincinnati Libraries and CET are partnering to host three screenings of “The Great American Read,” 8-9 p.m., Tuesdays, Sept. 11 and 25 and Oct. 9 in the Digital Commons Space on the fourth floor of the Walter C. Langsam Library. The PBS series features some of the 100 best-loved novels with testimonials from celebrities, authors, notable Americans and book lovers across the country talking about their pick for “The Great American Read.” Fresh popcorn and refreshments will be served.

The themes of the three screenings will include:

  • Sept. 11 – The Great American Read Fall Kick-Off
    Join host Meredith Vieira in the search for America’s best-loved novel.
  • Sept. 25 – Heroes
    Take a journey with some literary heroes to examine what makes them complex and relatable.
  • Oct. 9 – What We Do For love
    Fall in love all over again with some of literature’s most beautiful romances.

 

RSVPs not required, but attendees are encouraged to mark “going” on the Facebook event: https://www.facebook.com/events/298457014220539/.

Can’t join us for the screenings? Visit “The Great American Read” at http://www.pbs.org/the-great-american-read/home/ to learn more and vote for your favorite novel.

Win a Backpack Full of School Supplies

Stop by the Clermont College Library and sign up for a chance to win an Ibagbar backpack, filled with supplies for your college venture. The bag is made to hold a laptop and has multiple pockets to store your pens, papers, and markers.

Drop by the library’s information desk and fill out an entry. The contest ends September 14. We’ll announce the winner on September 17.

Penny McGinnis
Technical Services Manager

The Open Science Framework – a tool to help you organize and collaborate on research projects

Welcome back to campus!  As you begin to plan out your research projects or continue on going research, you may find a need to tie down all the working parts of your projects.  One tool that can help you is the Open Science Framework.  This tool developed by the Center for Open Science is a easy to use platform that allows you to create a structure to organize projects, invite collaborators, share within your research group and with the research community at large.  The mission of the COS is to promote transparency and reproducibility in research through practice and resource development.  Though the words open and science appear in the name, the projects you manage within the OSF are private from the start and made only public if you choose to share.  And you can share a part or all of the project as you wish.  And it is not just a STEM platform.  Any group needing to organize a project can use the OSF.  UC has a dedicated portal to the OSF at https://osf.uc.edu .

Over the next few weeks, stop back to Liblog to learn more about how UC researchers are using the OSF to facilitate their research projects.

Dean’s Corner: Welcome Back UC!

I am currently visiting Kuala Lumpur, Malaysia for the International Federation of Library Associations and Institutions (IFLA) World Library and Information Congress along with some of my colleagues from UC Libraries, but I’m excited to return to UC and greet our new and returning students and faculty.

At IFLA’s World Conference with Library Chief Technology Officer May Chang and Global Services Librarian Hong Cheng. Behind us is Kuala Lumpur’s famous Petronas Towers.

Before we dive into the fall semester, here’s a brief overview of the last few months at UC Libraries.

Several key library positions were filled over the summer, including: associate director of business affairs Jeremy Berberich; business and data analytics librarian Maggie Patel; associate dean of library services Brad Warren; and content analyst Dorcas Washington. The Digital Scholarship Center also continued to grow, welcoming digital scholarship library fellow Erin McCabe and data visualization developer Ezra Edgerton. They joined software developer Zhaowei Ren, with the support of a grant from the Andrew W. Mellon Foundation.

UC Libraries joined HathiTrust, a national and international partnership of research institutions and libraries.

The Winkler Center Advisory Board hosted the annual Cecil Striker Society Lecture, “Cincinnati Children’s Hospital Impacting the Health of Children in Our Community and the World: The Past, Present and Future,” with co-lecturers Michael K. Farrell, MD and Bea Katz, PhD.

Continue reading

New Popular Reading & Movie Collection Brought to You by the Clermont County Public Library

Do you read fiction? Young adult novels? Anime? Self-help? Do you enjoy popular movies? In partnership with the Clermont County Public Library, the Clermont College Library now offers a variety of popular reading material and DVDs.

Natalie Winland, Clermont College Library’s Public Services Manager, who had an integral part in coordinating our new offerings said, “We are excited to offer this new service to our students, faculty and staff.”

Use your Bearcat Card to check out best sellers, nonfiction, graphic novels, Anime, and feature films from the new collection, located on the first floor. Books check out for three weeks, DVDs for one week. We will be adding new items each semester.

Penny McGinnis

Technical Services Manager

Edward Locker’s 19th Century Views of Spain

By:  Savannah Gulick, Archives & Rare Books Library Student Assistant

Title Page, Edward LockerOne of the collecting areas of the Rare Books Collection in the Archives & Rare Books Library is early travel and exploration.  Though this area of the holdings ranges from the 16th century to the 20th, many of the travel accounts are illustrated volumes from the 19th century.  During the Peninsular War (1808-1813) that was fought between Napoleon and Spain against Great Britain and Portugal for the control of the Iberian Peninsula, the English watercolorist and civil secretary of 1st Viscount Exmouth Edward Pellew, Edward Hawke Locker, recorded his tour of Spain through watercolors and etchings. Following his appointment as civil commissioner of Greenwich Hospital, Locker proceeded to publish his account in Views of Spain (1824).

Locker, the youngest son of Captain William Locker, was born on October 9, 1777 in Kent. He entered the military following an education at Eton in 1795 at the naval pay office. From that point forward, he would secure a series of promotions until his retirement as civil commissioner Palenciain 1844 when he suffered a mental breakdown. Remembered as a man of varied talents, Locker was a skilled artist and a smooth conversationalist, and, was a fellow of the Royal Society. His pictorial tour of Spain is just one of his many illustrated works documenting his travels abroad. The British Empire and travel literature in the 19th century often go hand in hand as many of Britain’s skilled officers were sent on foreign tours and often documented their exotic travels (see account of India: https://libapps.libraries.uc.edu/liblog/2018/05/art-and-empire-in-nineteenth-century-india/). Continue reading

UCBA Library Closed Labor Day, September 3rd

Labor Day graphicThe UCBA Library will be closed Monday, September 3rd for Labor Day.  We will resume our regular Fall Semester hours on Tuesday, September 4th at 7:30 am.  Please visit our UC Blue Ash Library Hours page to view all of our hours, including holidays and any exceptions to our regular schedule.

Join Us for the 2018 Books by the Banks Poster Launch Featuring Artist Courttney Cooper

books by the banks poster launchUC Libraries is an organizing partner of Books by the Banks: Cincinnati Regional Book Festival. Join us for the 2018 Poster Launch on Thursday, Sept. 13 from 5-7pm at the Visionaries + Voices’ Visionarium at 3054 Madison Road in Oakley.

This year, Books by the Banks collaborated with Visionaries + Voices and artist Courttney Cooper on the creation of the poster art (a snippet of which is included on the invite at the top of this page). The launch will include refreshments, introductions by V+V and Books by the Banks, the poster reveal, and then remarks and a short Q&A with Courttney Cooper. Copies of the 2018 poster will be available for sale at the launch.

Courttney Cooper creates intensely detailed maps from his physical and psychological experiences in Cincinnati, Ohio. Using everyday materials of a Bic pen and re-purposed paper, Courttney methodically pieces fragments of his life experiences together. Established in 2003, Visionaries + Voices is a non-profit organization that provides exhibition opportunities, studio space, supplies and support to more than 125 visual artists with disabilities. V+V artists actively contribute to the greater arts community through creative, educational and strategic partnerships with local and regional artists, schools and business leaders. For more on Courttney Cooper and Visionaries + Voices, visit https://visionariesandvoices.com/courttney-cooper/.

The Books by the Banks festival is schedule for Saturday, October 20, 10am-5pm in the Duke Energy Center.